IL_5OQL_014

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_014 not in the Motif Atlas

Geometric match to IL_5TBW_378

Geometric discrepancy: 0.2829

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5OQL|1|1|A|215
5OQL|1|1|A|216
5OQL|1|1|G|217
*
5OQL|1|1|C|227
5OQL|1|1|G|228
5OQL|1|1|U|231

Current chains

Chain 1

35S rRNA

Nearby chains

Chain H

U3 small nucleolar RNA-associated protein 11

Chain Z

Bms1

Chain u

40S ribosomal protein S16-like protein