IL_5OQL_018
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUAG*CGACAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_018 not in the Motif Atlas
- Geometric match to IL_8C3A_401
- Geometric discrepancy: 0.3947
- The information below is about IL_8C3A_401
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02934.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OQL|1|1|C|358
5OQL|1|1|C|359
5OQL|1|1|U|360
5OQL|1|1|A|361
5OQL|1|1|G|362
*
5OQL|1|1|C|405
5OQL|1|1|G|406
5OQL|1|1|A|407
5OQL|1|1|C|408
5OQL|1|1|A|409
5OQL|1|1|G|410
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain H
- U3 small nucleolar RNA-associated protein 11
- Chain Z
- Bms1
- Chain k
- Fcf2
Coloring options: