IL_5OQL_020

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_020 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1776

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

5OQL|1|1|G|366
5OQL|1|1|U|367
5OQL|1|1|G|368
*
5OQL|1|1|C|398
5OQL|1|1|G|399
5OQL|1|1|C|400

Current chains

Chain 1

35S rRNA

Nearby chains

Chain H

U3 small nucleolar RNA-associated protein 11

Chain Z

Bms1

Chain k

Fcf2