IL_5OQL_022
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCG*CCUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_022 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.211
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
5OQL|1|1|G|376
5OQL|1|1|U|377
5OQL|1|1|C|378
5OQL|1|1|G|379
*
5OQL|1|1|C|387
5OQL|1|1|C|388
5OQL|1|1|U|389
5OQL|1|1|C|390
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain H
- U3 small nucleolar RNA-associated protein 11
- Chain S
- Nop1
- Chain Z
- Bms1
- Chain k
- Fcf2
Coloring options: