IL_5OQL_027

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_027 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.1506

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5OQL|1|1|C|454
5OQL|1|1|G|455
5OQL|1|1|A|456
5OQL|1|1|G|457
*
5OQL|1|1|C|475
5OQL|1|1|G|476
5OQL|1|1|A|477
5OQL|1|1|G|478

Current chains

Chain 1

35S rRNA

Nearby chains

Chain K

Utp14

Chain T

Putative nucleolar protein