IL_5OQL_035
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUAAG*CGAAA
- Length
- 11 nucleotides
- Bulged bases
- 5OQL|1|1|U|653, 5OQL|1|1|A|655
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_035 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.2084
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OQL|1|1|U|651
5OQL|1|1|A|652
5OQL|1|1|U|653
5OQL|1|1|A|654
5OQL|1|1|A|655
5OQL|1|1|G|656
*
5OQL|1|1|C|668
5OQL|1|1|G|669
5OQL|1|1|A|670
5OQL|1|1|A|671
5OQL|1|1|A|672
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain o
- 40S ribosomal protein S6
Coloring options: