IL_5OQL_046
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUCAA*UGACAACG
- Length
- 14 nucleotides
- Bulged bases
- 5OQL|1|1|U|897, 5OQL|1|1|C|935
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_046 not in the Motif Atlas
- Geometric match to IL_5J7L_014
- Geometric discrepancy: 0.2803
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5OQL|1|1|U|895
5OQL|1|1|A|896
5OQL|1|1|U|897
5OQL|1|1|C|898
5OQL|1|1|A|899
5OQL|1|1|A|900
*
5OQL|1|1|U|932
5OQL|1|1|G|933
5OQL|1|1|A|934
5OQL|1|1|C|935
5OQL|1|1|A|936
5OQL|1|1|A|937
5OQL|1|1|C|938
5OQL|1|1|G|939
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain q
- 40S ribosomal protein S8
- Chain v
- 40S ribosomal protein S11-like protein
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