IL_5OQL_074

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_074 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2062

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5OQL|1|1|U|2079
5OQL|1|1|U|2080
5OQL|1|1|G|2081
*
5OQL|1|1|C|2092
5OQL|1|1|C|2093
5OQL|1|1|G|2094

Current chains

Chain 1

35S rRNA

Nearby chains

Chain Q

Utp30

Chain c

Putative U3 small nucleolar ribonucleoprotein protein

Chain k

Fcf2