IL_5OQL_076

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OQL_076 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.3491

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5OQL|1|1|C|2236
5OQL|1|1|G|2237
5OQL|1|1|A|2238
5OQL|1|1|U|2239
*
5OQL|1|1|A|2327
5OQL|1|1|G|2328
5OQL|1|1|A|2329
5OQL|1|1|G|2330

Current chains

Chain 1

35S rRNA

Nearby chains