IL_5OT7_021
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_021 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.1859
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
5OT7|1|1|C|504
5OT7|1|1|G|505
5OT7|1|1|G|506
5OT7|1|1|C|507
5OT7|1|1|C|508
5OT7|1|1|A|509
5OT7|1|1|A|510
5OT7|1|1|C|511
*
5OT7|1|1|G|540
5OT7|1|1|G|541
Current chains
- Chain 1
- 16S Ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S4
- Chain D
- 30S ribosomal protein S5
- Chain K
- 30S ribosomal protein S12
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