IL_5OT7_048

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_048 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2042

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

5OT7|1|1|A|1350
5OT7|1|1|U|1351
5OT7|1|1|C|1352
*
5OT7|1|1|G|1371
5OT7|1|1|U|1372

Current chains

Chain 1

16S Ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S7

Chain H

30S ribosomal protein S9

Chain T

30S ribosomal protein Thx