IL_5OT7_064

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

5OT7|1|4|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_064 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.1872

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

5OT7|1|4|G|81
5OT7|1|4|G|82
5OT7|1|4|G|83
5OT7|1|4|A|84
5OT7|1|4|G|85
*
5OT7|1|4|C|97
5OT7|1|4|G|98
5OT7|1|4|U|99
5OT7|1|4|G|100
5OT7|1|4|G|102
5OT7|1|4|A|103
5OT7|1|4|U|104
5OT7|1|4|C|105

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L29

Chain z

50S ribosomal protein L24