IL_5OT7_066
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_066 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.1484
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5OT7|1|4|G|188
5OT7|1|4|G|189
5OT7|1|4|A|190
5OT7|1|4|A|191
5OT7|1|4|C|192
5OT7|1|4|U|193
5OT7|1|4|G|194
*
5OT7|1|4|C|201
5OT7|1|4|U|202
5OT7|1|4|C|203
5OT7|1|4|A|204
5OT7|1|4|G|205
5OT7|1|4|U|206
5OT7|1|4|A|207
5OT7|1|4|C|208
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L34
- Chain d
- 50S ribosomal protein L35
- Chain q
- 50S ribosomal protein L15
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