IL_5OT7_073
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 5OT7|1|4|U|504, 5OT7|1|4|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_073 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.1476
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
5OT7|1|4|G|481
5OT7|1|4|A|482
5OT7|1|4|A|483
5OT7|1|4|C|484
*
5OT7|1|4|G|496
5OT7|1|4|A|497
5OT7|1|4|G|498
5OT7|1|4|U|499
5OT7|1|4|G|500
5OT7|1|4|A|501
5OT7|1|4|A|502
5OT7|1|4|A|503
5OT7|1|4|U|504
5OT7|1|4|A|505
5OT7|1|4|G|506
5OT7|1|4|A|507
5OT7|1|4|G|508
5OT7|1|4|C|509
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain x
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L23
- Chain z
- 50S ribosomal protein L24
Coloring options: