IL_5OT7_084

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

5OT7|1|4|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_084 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.2523

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5OT7|1|4|C|844
5OT7|1|4|G|845
5OT7|1|4|C|846
*
5OT7|1|4|G|931
5OT7|1|4|G|932
5OT7|1|4|A|933
5OT7|1|4|G|934

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L30