IL_5OT7_086
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_086 not in the Motif Atlas
- Homologous match to IL_7A0S_027
- Geometric discrepancy: 0.141
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OT7|1|4|C|857
5OT7|1|4|U|858
5OT7|1|4|G|859
5OT7|1|4|U|860
5OT7|1|4|A|861
5OT7|1|4|G|862
*
5OT7|1|4|C|915
5OT7|1|4|G|916
5OT7|1|4|A|917
5OT7|1|4|A|918
5OT7|1|4|G|919
5OT7|1|4|G|920
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain V
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L30
- Chain r
- 50S ribosomal protein L16
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