IL_5OT7_088
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_088 not in the Motif Atlas
- Homologous match to IL_7RQB_029
- Geometric discrepancy: 0.1486
- The information below is about IL_7RQB_029
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.1
- Basepair signature
- cWW-tSW-cWS-cSH-tWH-R-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5OT7|1|4|G|864
5OT7|1|4|C|865
5OT7|1|4|A|866
5OT7|1|4|C|867
5OT7|1|4|U|868
*
5OT7|1|4|A|909
5OT7|1|4|A|910
5OT7|1|4|A|911
5OT7|1|4|C|912
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain 6
- 50S ribosomal protein L25
- Chain r
- 50S ribosomal protein L16
Coloring options: