IL_5OT7_089
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_089 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.4408
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5OT7|1|4|G|875
5OT7|1|4|C|876
5OT7|1|4|U|877
5OT7|1|4|A|878
5OT7|1|4|G|879
*
5OT7|1|4|C|898
5OT7|1|4|A|899
5OT7|1|4|A|900
5OT7|1|4|A|901
5OT7|1|4|C|902
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L25
- Chain r
- 50S ribosomal protein L16
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