IL_5OT7_093

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_093 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.168

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5OT7|1|4|C|1004
5OT7|1|4|C|1005
5OT7|1|4|C|1006
5OT7|1|4|C|1007
5OT7|1|4|C|1008
5OT7|1|4|A|1009
5OT7|1|4|A|1010
5OT7|1|4|G|1011
*
5OT7|1|4|C|1150
5OT7|1|4|G|1151

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L13

Chain v

50S ribosomal protein L20