IL_5OT7_109
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAAG*CGUAGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_109 not in the Motif Atlas
- Geometric match to IL_1LNT_002
- Geometric discrepancy: 0.382
- The information below is about IL_1LNT_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5OT7|1|4|G|1356
5OT7|1|4|U|1357
5OT7|1|4|G|1358
5OT7|1|4|A|1359
5OT7|1|4|A|1360
5OT7|1|4|G|1361
*
5OT7|1|4|C|1370
5OT7|1|4|G|1371
5OT7|1|4|U|1372
5OT7|1|4|A|1373
5OT7|1|4|G|1374
5OT7|1|4|C|1375
Current chains
- Chain 4
- 23S Ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L34
- Chain g
- 50S ribosomal protein L2
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