IL_5OT7_115

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

5OT7|1|4|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_115 not in the Motif Atlas

Geometric match to IL_6D3P_004

Geometric discrepancy: 0.3284

The information below is about IL_6D3P_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5OT7|1|4|C|1450|||A
5OT7|1|4|C|1451
*
5OT7|1|4|G|1459
5OT7|1|4|A|1460
5OT7|1|4|G|1461

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L17