IL_5OT7_149

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_149 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.169

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

5OT7|1|4|C|2350
5OT7|1|4|G|2351
5OT7|1|4|A|2352
5OT7|1|4|G|2353
*
5OT7|1|4|C|2364
5OT7|1|4|G|2365
5OT7|1|4|A|2366
5OT7|1|4|G|2367

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L27

Chain d

50S ribosomal protein L35

Chain t

50S ribosomal protein L18