IL_5OT7_156

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5OT7|1|4|G|2576, 5OT7|1|4|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_156 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1378

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5OT7|1|4|C|2510
5OT7|1|4|U|2511
5OT7|1|4|C|2512
*
5OT7|1|4|G|2574
5OT7|1|4|C|2575
5OT7|1|4|G|2576
5OT7|1|4|A|2577
5OT7|1|4|G|2578

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L32

Chain h

50S ribosomal protein L3