IL_5OT7_169

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_169 not in the Motif Atlas

Homologous match to IL_7A0S_100

Geometric discrepancy: 0.2316

The information below is about IL_7A0S_100

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5OT7|1|4|G|2843
5OT7|1|4|G|2844
5OT7|1|4|G|2845
*
5OT7|1|4|C|2871
5OT7|1|4|G|2872
5OT7|1|4|A|2873
5OT7|1|4|C|2874

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L3

Chain s

50S ribosomal protein L17

Chain u

50S ribosomal protein L19