IL_5OT7_180
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAACC*GGGUAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OT7_180 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.2886
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5OT7|1|1|C|779
5OT7|1|1|A|780
5OT7|1|1|A|781
5OT7|1|1|A|782
5OT7|1|1|C|783
5OT7|1|1|C|784
*
5OT7|1|1|G|798
5OT7|1|1|G|799
5OT7|1|1|G|800
5OT7|1|1|U|801
5OT7|1|1|A|802
5OT7|1|1|G|803
Current chains
- Chain 1
- 16S Ribosomal RNA
Nearby chains
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 30S ribosomal protein S11
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