IL_5OT7_196

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

5OT7|1|1|G|1053, 5OT7|1|1|C|1054

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OT7_196 not in the Motif Atlas

Geometric match to IL_1FUF_003

Geometric discrepancy: 0.3557

The information below is about IL_1FUF_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5OT7|1|1|U|1052
5OT7|1|1|G|1053
5OT7|1|1|C|1054
5OT7|1|1|A|1055
*
5OT7|1|1|U|1205
5OT7|1|1|G|1206

Current chains

Chain 1

16S Ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S3

Chain M

30S ribosomal protein S14 type Z

Chain U

Elongation factor G