IL_5T2A_009

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGCC*GACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_009 not in the Motif Atlas

Geometric match to IL_4LFB_008

Geometric discrepancy: 0.2523

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5T2A|1|2|C|115
5T2A|1|2|U|116
5T2A|1|2|G|117
5T2A|1|2|C|118
5T2A|1|2|C|119
*
5T2A|1|2|G|340
5T2A|1|2|A|341
5T2A|1|2|C|342
5T2A|1|2|G|343

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 5

eS8