IL_5T2A_013

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

5T2A|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_013 not in the Motif Atlas

Geometric match to IL_6JDV_003

Geometric discrepancy: 0.3261

The information below is about IL_6JDV_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5T2A|1|2|C|198
5T2A|1|2|C|199
*
5T2A|1|2|G|226
5T2A|1|2|U|227
5T2A|1|2|G|228

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

eS8