IL_5T2A_016
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGUGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_016 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.22
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37738.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|2|U|362
5T2A|1|2|G|363
5T2A|1|2|G|364
5T2A|1|2|U|365
5T2A|1|2|G|366
5T2A|1|2|A|367
*
5T2A|1|2|U|389
5T2A|1|2|G|390
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- eS8
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AE
- uS17
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- eL19
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