IL_5T2A_023

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CCAAUAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_023 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.2411

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5T2A|1|2|G|561
5T2A|1|2|G|562
5T2A|1|2|G|563
*
5T2A|1|2|C|578
5T2A|1|2|C|579
5T2A|1|2|A|580
5T2A|1|2|A|581
5T2A|1|2|U|582
5T2A|1|2|A|583
5T2A|1|2|U|584
5T2A|1|2|C|585

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 6

uS4

Chain AT

eS24