IL_5T2A_025

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5T2A|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_025 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.2682

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

5T2A|1|2|G|606
5T2A|1|2|U|607
5T2A|1|2|C|608
*
5T2A|1|2|G|635
5T2A|1|2|C|636

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 6

uS4

Chain AS

uS12

Chain AX

uS3

Chain AY

eS30