IL_5T2A_029

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGU*AUUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_029 not in the Motif Atlas

Homologous match to IL_4V88_419

Geometric discrepancy: 0.5536

The information below is about IL_4V88_419

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5T2A|1|2|C|719
5T2A|1|2|G|720
5T2A|1|2|U|721
*
5T2A|1|2|A|731
5T2A|1|2|U|732
5T2A|1|2|U|733
5T2A|1|2|U|734
5T2A|1|2|G|735

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AC

uS2

Chain AR

eS21