IL_5T2A_031

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUC*GC

Length

7 nucleotides

Bulged bases

5T2A|1|2|G|792, 5T2A|1|2|U|793, 5T2A|1|2|U|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_031 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.2641

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5T2A|1|2|G|791
5T2A|1|2|G|792
5T2A|1|2|U|793
5T2A|1|2|U|794
5T2A|1|2|C|795
*
5T2A|1|2|G|831
5T2A|1|2|C|832

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 3

eS6