IL_5T2A_035

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UACC*GGCUUUUGUUGGUUUUAAAG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|U|929
5T2A|1|2|A|930
5T2A|1|2|C|931
5T2A|1|2|C|932
*
5T2A|1|2|G|938
5T2A|1|2|G|939
5T2A|1|2|C|940
5T2A|1|2|U|941
5T2A|1|2|U|942
5T2A|1|2|U|943
5T2A|1|2|U|944
5T2A|1|2|G|945
5T2A|1|2|U|946
5T2A|1|2|U|947
5T2A|1|2|G|948
5T2A|1|2|G|949
5T2A|1|2|U|950
5T2A|1|2|U|951
5T2A|1|2|U|952
5T2A|1|2|U|953
5T2A|1|2|A|954
5T2A|1|2|A|955
5T2A|1|2|A|956
5T2A|1|2|G|957

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

eS6

Chain 5

eS8

Chain AE

uS17