IL_5T2A_043

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_043 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.1355

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5T2A|1|2|G|1232
5T2A|1|2|A|1233
5T2A|1|2|G|1234
5T2A|1|2|A|1235
5T2A|1|2|U|1236
5T2A|1|2|C|1237
*
5T2A|1|2|G|1261
5T2A|1|2|U|1262
5T2A|1|2|C|1263

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AH

uS11

Chain AV

eS26

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain c

uL2