IL_5T2A_055

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCAGUAG*CUUCUCUG

Length

16 nucleotides

Bulged bases

5T2A|1|2|G|1699, 5T2A|1|2|U|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|C|1695
5T2A|1|2|C|1696
5T2A|1|2|C|1697
5T2A|1|2|A|1698
5T2A|1|2|G|1699
5T2A|1|2|U|1700
5T2A|1|2|A|1701
5T2A|1|2|G|1702
*
5T2A|1|2|C|1777
5T2A|1|2|U|1778
5T2A|1|2|U|1779
5T2A|1|2|C|1780
5T2A|1|2|U|1781
5T2A|1|2|C|1782
5T2A|1|2|U|1783
5T2A|1|2|G|1784

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 7

RACK1

Chain AK

uS9

Chain AQ

uS10