IL_5T2A_063

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_063 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1054

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5T2A|1|2|G|2077
5T2A|1|2|U|2078
5T2A|1|2|G|2079
*
5T2A|1|2|C|2140
5T2A|1|2|U|2141
5T2A|1|2|U|2142

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

eS8

Chain B

Large subunit ribosomal RNA; LSU rRNA