IL_5T2A_065
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_065 not in the Motif Atlas
- Homologous match to IL_8C3A_478
- Geometric discrepancy: 0.1325
- The information below is about IL_8C3A_478
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
5T2A|1|2|A|2084
5T2A|1|2|C|2085
5T2A|1|2|A|2086
5T2A|1|2|G|2087
*
5T2A|1|2|C|2132
5T2A|1|2|G|2133
5T2A|1|2|A|2134
5T2A|1|2|U|2135
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- eS6
- Chain 5
- eS8
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- eL24
Coloring options: