IL_5T2A_069
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGAACUU*AUUACUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_069 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0841
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5T2A|1|A|C|29
5T2A|1|A|C|30
5T2A|1|A|G|31
5T2A|1|A|A|32
5T2A|1|A|A|33
5T2A|1|A|C|34
5T2A|1|A|U|35
5T2A|1|A|U|36
*
5T2A|1|A|A|43
5T2A|1|A|U|44
5T2A|1|A|U|45
5T2A|1|A|A|46
5T2A|1|A|C|47
5T2A|1|A|U|48
5T2A|1|A|C|49
5T2A|1|A|A|50
5T2A|1|A|G|51
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- eL13
- Chain O
- eL15
- Chain Z
- uL15
- Chain l
- eL37
- Chain r
- eL42
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