IL_5T2A_072

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

5T2A|1|A|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_072 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.1962

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5T2A|1|A|A|122
5T2A|1|A|U|123
*
5T2A|1|A|A|143
5T2A|1|A|G|144
5T2A|1|A|U|145
5T2A|1|A|U|146
5T2A|1|A|G|147
5T2A|1|A|U|148

Current chains

Chain A

LSU-alpha

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain O

eL15

Chain v

eL8