IL_5T2A_076

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_076 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.2177

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

5T2A|1|A|U|476
5T2A|1|A|C|477
5T2A|1|A|C|478
*
5T2A|1|A|G|656
5T2A|1|A|G|657

Current chains

Chain A

LSU-alpha

Nearby chains

Chain G

Large subunit ribosomal RNA; LSU rRNA

Chain g

eL32

Chain j

eL33