IL_5T2A_078

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

5T2A|1|A|G|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_078 not in the Motif Atlas

Geometric match to IL_4V88_442

Geometric discrepancy: 0.3606

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5T2A|1|A|G|487
5T2A|1|A|G|488
5T2A|1|A|C|489
*
5T2A|1|A|G|645
5T2A|1|A|C|646

Current chains

Chain A

LSU-alpha

Nearby chains

Chain F

srRNA3

Chain g

eL32

Chain j

eL33

Chain t

eL6