IL_5T2A_080

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUACUG*CAAGAAUUUUG

Length

17 nucleotides

Bulged bases

5T2A|1|A|A|551, 5T2A|1|A|U|557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|A|C|501
5T2A|1|A|U|502
5T2A|1|A|A|503
5T2A|1|A|C|504
5T2A|1|A|U|505
5T2A|1|A|G|506
*
5T2A|1|A|C|549
5T2A|1|A|A|550
5T2A|1|A|A|551
5T2A|1|A|G|552
5T2A|1|A|A|553
5T2A|1|A|A|554
5T2A|1|A|U|555
5T2A|1|A|U|556
5T2A|1|A|U|557
5T2A|1|A|U|558
5T2A|1|A|G|559

Current chains

Chain A

LSU-alpha

Nearby chains

Chain Q

eL20

Chain j

eL33

Chain p

uL4

Chain t

eL6

Chain u

uL30