IL_5T2A_089
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAU
- Length
- 5 nucleotides
- Bulged bases
- 5T2A|1|A|A|947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_089 not in the Motif Atlas
- Homologous match to IL_8C3A_031
- Geometric discrepancy: 0.1471
- The information below is about IL_8C3A_031
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5T2A|1|A|A|879
5T2A|1|A|C|880
*
5T2A|1|A|G|946
5T2A|1|A|A|947
5T2A|1|A|U|948
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- srRNA1
- Chain c
- uL2
- Chain h
- eL34
- Chain m
- eL43
Coloring options: