IL_5T2A_091
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_091 not in the Motif Atlas
- Geometric match to IL_4V9F_027
- Geometric discrepancy: 0.0955
- The information below is about IL_4V9F_027
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
5T2A|1|A|U|885
5T2A|1|A|G|886
5T2A|1|A|A|887
5T2A|1|A|A|888
5T2A|1|A|G|889
*
5T2A|1|A|U|906
5T2A|1|A|G|907
5T2A|1|A|G|908
5T2A|1|A|A|909
5T2A|1|A|G|910
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- srRNA1
- Chain R
- eL19
- Chain c
- uL2
- Chain m
- eL43
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