IL_5T2A_096

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UGG

Length

5 nucleotides

Bulged bases

5T2A|1|A|G|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_096 not in the Motif Atlas

Geometric match to IL_4WF9_023

Geometric discrepancy: 0.3823

The information below is about IL_4WF9_023

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

5T2A|1|A|C|995
5T2A|1|A|A|996
*
5T2A|1|A|U|1465
5T2A|1|A|G|1466
5T2A|1|A|G|1467

Current chains

Chain A

LSU-alpha

Nearby chains

Chain I

eL18

Chain Z

uL15

Chain a

eL28

Chain g

eL32