IL_5T2A_099

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAGUAGA*UAGAG

Length

12 nucleotides

Bulged bases

5T2A|1|A|A|1028, 5T2A|1|A|G|1032, 5T2A|1|A|A|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|A|U|1027
5T2A|1|A|A|1028
5T2A|1|A|G|1029
5T2A|1|A|U|1030
5T2A|1|A|A|1031
5T2A|1|A|G|1032
5T2A|1|A|A|1033
*
5T2A|1|A|U|1158
5T2A|1|A|A|1159
5T2A|1|A|G|1160
5T2A|1|A|A|1161
5T2A|1|A|G|1162

Current chains

Chain A

LSU-alpha

Nearby chains

Chain I

eL18

Chain S

eL21

Chain b

eL29

Chain u

uL30