IL_5T2A_101
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T2A_101 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.2057
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|A|C|1043
5T2A|1|A|G|1044
5T2A|1|A|G|1045
5T2A|1|A|U|1046
5T2A|1|A|A|1047
5T2A|1|A|A|1048
*
5T2A|1|A|U|1103
5T2A|1|A|A|1104
5T2A|1|A|A|1105
5T2A|1|A|A|1106
5T2A|1|A|U|1107
5T2A|1|A|G|1108
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain J
- uL16
- Chain Q
- eL20
- Chain S
- eL21
- Chain u
- uL30
Coloring options: