IL_5T2A_102

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_102 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.1013

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5T2A|1|A|A|1048
5T2A|1|A|A|1049
*
5T2A|1|A|U|1101
5T2A|1|A|U|1102
5T2A|1|A|U|1103

Current chains

Chain A

LSU-alpha

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain D

5S ribosomal RNA; 5S rRNA

Chain J

uL16

Chain S

eL21

Chain s

uL18