IL_5T2A_104

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T2A_104 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.1521

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5T2A|1|A|A|1057
5T2A|1|A|U|1058
5T2A|1|A|U|1059
5T2A|1|A|A|1060
*
5T2A|1|A|U|1092
5T2A|1|A|U|1093
5T2A|1|A|C|1094
5T2A|1|A|U|1095

Current chains

Chain A

LSU-alpha

Nearby chains

Chain D

5S ribosomal RNA; 5S rRNA

Chain J

uL16

Chain s

uL18